htSeqTools: high-throughput sequencing quality control, processing and visualization in R.
| Title | htSeqTools: high-throughput sequencing quality control, processing and visualization in R. |
| Publication Type | Journal Article |
| Year of Publication | 2012 |
| Authors | Planet, Evarist, Attolini Camille Stephan- Ot, Reina Oscar, Flores Oscar, and Rossell David |
| Journal | Bioinformatics |
| Volume | 28 |
| Pagination | 589-90 |
| Date Published | 2012 Feb 15 |
| ISSN | 1367-4811 |
| Keywords | Genomics, High-Throughput Nucleotide Sequencing, Humans, Internet, Oligonucleotide Array Sequence Analysis, Quality Control, Saccharomyces cerevisiae, Software |
| Abstract | UNLABELLED: We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists. AVAILABILITY: www.bioconductor.org. |
| DOI | 10.1093/bioinformatics/btr700 |