Entry: NAFlex_RNA_miniABC_KCl_3
Nucleic Acid Data:
| Sequence | GCAGAAACAGCUCUGCGC |
| Rev. Sequence | GCGCAGAGCUGUUUCUGC |
| Type | |
| SubType | |
| Chains | |
| Pdb | - |
| Ligands | |
| Keywords |
MD Simulation >> (Click to expand/shrink)
| Simulation Metadata | |
|---|---|
| Force Field | parmBSC0+OL3 |
| Simulation Date | 2022-Aug-24 |
| Simulated Time | - ns |
| Time Step | |
| Parts | - |
| Temperature | K |
| Water | |
| Additional Solvent | |
| Counter Ions | |
| Ionic Concentration | - |
| Additional Ions | |
| Additional Molecules | |
| Ions Parameters | |
Unified Molecular Modeling (UMM) Metadata
(Click to see full UMM)
(Click to see full UMM)
| Simulation Metadata (UMM) | |
|---|---|
| Author | . |
| IonicConcentration | - |
| Parts | - |
| RMSd_avg | 2.081 |
| RMSd_stdev | 0.484 |
| Rgyr_avg | 16.745 |
| Rgyr_stdev | 0.558 |
| SASA_avg | 6538.323 |
| SASA_stdev | 99.420 |
| Temperature | K |
| _id | NAFlex_RNA_miniABC_KCl_3 |
| boxAngle | 109.471219 |
| boxX | 82.5157479 |
| boxY | 82.5157479 |
| boxZ | 82.5157479 |
| dataset | Array |
| date | 2022-Aug-24 |
| description | |
| forceField | parmBSC0+OL3 |
| ionsModel | - |
| moleculeType | Rna |
| rev_sequence | GCGCAGAGCUGUUUCUGC |
| saltConcentration | - |
| sequence | GCAGAAACAGCUCUGCGC |
| soluteAtoms | 1154 |
| soluteCharge | -34 |
| soluteResidues | 36 |
| solventAtoms | - |
| solventResidues | - |
| time | - |
| totalAtoms | 1154 |
| totalCharge | -34 |
| totalIons | - |
| totalResidues | 36 |
| Quality Control | |
|---|---|
| RMSd | 2.081 (0.484) Å  |
| Rgyr | 16.745 (0.558) Å  |
| SASA | 6538.323 (99.420) Ų  |
| RMSf |  |
