Entry: NAFlex_TF_3v79_10_dna_wholeA


Nucleic Acid Data:


SequenceGTTACTGTGXGAAAGAAA
Rev. SequenceTTTCTTTCCCACAGTAAC
TypeDNA
SubTypeB
Chainsduplex
Pdb-
LigandsNo
KeywordsDNA-B Duplex Naked TIP3P Electroneutral


Simulation Metadata
Force FieldparmBSC1
Simulation Date2022-Jul-01
Simulated Time200 ns
Time Step2 ps
PartsDNA
Temperature300K
WaterTIP3P
Additional SolventNo
Counter IonsK+Cl-
Ionic ConcentrationElectroneutrality
Additional Ions150 mM
Additional MoleculesNo
Ions ParametersDang
Unified Molecular Modeling (UMM) Metadata
(Click to see full UMM)
Simulation Metadata (UMM)
AdditionalIons150 mM
AdditionalMoleculesNo
AdditionalSolventNo
AuthorM.W.
Chainsduplex
CommentsMilosz MSCA
CounterIonsK+Cl-
Formatxtc
FrameStep2 ps
Frames250
IonicConcentrationElectroneutrality
IonsParametersDang
LigandsNo
NucTypeDNA
PDB-
PartsDNA
RMSd_avg3.114
RMSd_stdev0.666
Rgyr_avg18.686
Rgyr_stdev0.523
SASA_avg6480.897
SASA_stdev151.715
SubTypeB
Temperature300K
Topologywhole.pdb
Trajectorywhole.xtc
WaterTIP3P
_idNAFlex_TF_3v79_10_dna_wholeA
datasetArray
date2022-Jul-01
descriptionDNA-B Duplex Naked TIP3P Electroneutral
forceFieldparmBSC1
ionsModel-
moleculeTypeDna
rev_sequenceTTTCTTTCCCACAGTAAC
saltConcentration-
sequenceGTTACTGTGXGAAAGAAA
soluteAtoms1145
soluteCharge-
soluteResidues36
solventAtoms-
solventResidues-
time200
totalAtoms1145
totalCharge-
totalIons-
totalResidues36
Quality Control
RMSd3.114 (0.666) Å    
Rgyr18.686 (0.523) Å    
SASA6480.897 (151.715) Ų    
RMSf