Entry: NAFlex_TF_4m9e_3_wholeA


Nucleic Acid Data:


SequenceGGXGTGTGGCG
Rev. SequenceCCACACCCCXXX
TypeProt+DNA
SubTypeB
Chainsduplex
Pdb-
LigandsNo
Keywords-B Duplex Naked TIP3P Electroneutral


Simulation Metadata
Force FieldparmBSC1
Simulation Date2022-Jul-25
Simulated Time200 ns
Time Step2 ps
PartsProt+DNA
Temperature300K
WaterTIP3P
Additional SolventNo
Counter IonsK+Cl-
Ionic ConcentrationElectroneutrality
Additional Ions150 mM
Additional MoleculesNo
Ions ParametersDang
Unified Molecular Modeling (UMM) Metadata
(Click to see full UMM)
Simulation Metadata (UMM)
AdditionalIons150 mM
AdditionalMoleculesNo
AdditionalSolventNo
AuthorM.W.
Chainsduplex
CommentsMilosz MSCA
CounterIonsK+Cl-
Formatxtc
FrameStep2 ps
Frames250
IonicConcentrationElectroneutrality
IonsParametersDang
LigandsNo
NucTypeProt+DNA
PDB-
PartsProt+DNA
RMSd_avg3.079
RMSd_stdev0.238
Rgyr_avg15.898
Rgyr_stdev0.389
SASA_avg9218.509
SASA_stdev283.605
SubTypeB
Temperature300K
Topologywhole.pdb
Trajectorywhole.xtc
WaterTIP3P
_idNAFlex_TF_4m9e_3_wholeA
datasetArray
date2022-Jul-25
description-B Duplex Naked TIP3P Electroneutral
forceFieldparmBSC1
ionsModel-
moleculeTypeProt
rev_sequenceCCACACCCCXXX
saltConcentration-
sequenceGGXGTGTGGCG
soluteAtoms2002
soluteCharge-
soluteResidues108
solventAtoms-
solventResidues-
time200
totalAtoms2002
totalCharge-
totalIons-
totalResidues108
Quality Control
RMSd3.079 (0.238) Å    
Rgyr15.898 (0.389) Å    
SASA9218.509 (283.605) Ų    
RMSf