Homepage - BioBB REST API

{···} BioBB REST API

BioBB (BioExcel Building Blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. In this site we provide programmatic access to them via a REST API interface. Further information can be found in the Availability and Tutorials sections of this site.

For more information about BioExcel Building Blocks, please visit the official website or the official repository.

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Availability

Generic Endpoints

Generic endpoints for the BioBB REST API

Tools Endpoints

All the endpoints for each tool of each package for the BioBB REST API

Tools Execution

Automatic execution of each tool through the BioBB REST API

Tutorials

REST API Tutorial

Examples for executing the BioBB REST API from python

MD Setup Tutorial

Process of setting up a simulation system containing a protein, step by step

About us

BioExcel Building Blocks REST API (BioBB REST API), programmatic access to interoperable biomolecular simulation tools
Genís Bayarri, Pau Andrio, Adam Hospital , Modesto Orozco and Josep Ll. Gelpí .
Bioinformatics, btac316 (11 May 2022)

BioBB REST API is powered by BioExcel Building Blocks

BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows.
Pau Andrio, Adam Hospital, Javier Conejero, Luis Jordá, Marc Del Pino, Laia Codo, Stian Soiland-Reyes, Carole Goble, Daniele Lezzi, Rosa M. Badia, Modesto Orozco & Josep Ll. Gelpí .
Nature Scientific Data, 09/2019, Volume 6, Issue 1, p.169, (2019)

Visit the official BioExcel Building Blocks website clicking here.