|
Id. |
PDB |
Type |
SubType |
ForceField |
Solvent |
Description |
Time (ns) |
Sequence |
|
NAFlex_ProtDNA_1h9t |
1H9T |
Prot-Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
2,000 |
CATCTGGTACGACCAGATC |
|
NAFlex_ProtDNA_1hlv |
1HLV |
Prot-Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
2,000 |
AATCCCGTTTCCAACGAAGGC |
|
NAFlex_ProtDNA_2kdz |
2KDZ |
Prot-Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
2,000 |
AAGATAACGATATTTA |
|
NAFlex_2oue |
2OUE |
Rna |
A |
parmBSC0 |
TIP3P |
RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral Flipout-bases Overhanging-bases Hammerhead Ribozyme Bulges |
1,065 |
UCCCXGUCCACCG | CGGUGAGAAGGG | GGCAGAGAAACACACGA |
|
NAFlex_1hlv |
1HLV |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc ParmBSC1 SPC/E AddedSalt |
1,000 |
AATCCCGTTTCCAACGAAGGC |
|
NAFlex_muGAAC |
NONE |
Dna |
B |
parmBSC0 |
SPCE |
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt |
1,000 |
GCACGAACGAACGAACGC |
|
NAFlex_miniABC_K_11 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl |
1,000 |
GCTGATATACGATGCAGC |
|
NAFlex_miniABC_Na_11 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl |
1,000 |
GCTGATATACGATGCAGC |
|
NAFlex_miniABC_NaK_11 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% |
1,000 |
GCTGATATACGATGCAGC |
|
NAFlex_RNA_miniABC_KCl_11 |
NONE |
Rna |
A |
parmBSC0+OL3 |
TIP3P |
RNA-A Duplex Naked TIP3P AddedSalt |
1,000 |
GCUGAUAUACGAUGCAGC |
|
NAFlex_GGf |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ModifiedNucleotides ParmBSC1 TIP3P Electroneutral |
500 |
CCATACGATACGG |
|
NAFlex_36merSPCE |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked ParmBSC1 SPC/E Electroneutral |
300 |
CGCGATTGCCTAACGAGTACTCGTTAGGCAATCGCG |
|
NAFlex_36merTIP3P |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
300 |
CGCGATTGCCTAACGAGTACTCGTTAGGCAATCGCG |
