BIGNASim database structure and analysis portal for nucleic acids simulation data


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Id. PDB Type SubType ForceField Solvent Description Time (ns) Sequence
Id. PDB Type SubType ForceField Solvent Description Time (ns) Sequence
NAFlex_2lpw 2LPW Dna G-loop parmBSC1 TIP3P DNA Single Stranded Naked ParmBSC1 TIP3P Electroneutral G-Loop 5,000 AAGGGTGGGTGTAAGTGTGGGTGGGT
NAFlex_1anr 1ANR Rna A parmBSC0 TIP3P RNA-A Single Stranded HIV-1 TAR Naked ParmBSC0 TIP3P Electroneutral internal-loops hairpin-loops 4,939 GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
NAFlex_D05M 1BNA Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 3,000 CGCGAATTCGCG
NAFlex_DTipDang015M 1BNA Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 2,000 CGCGAATTCGCG
NAFlex_ProtDNA_1a66 1A66 Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CAATTTTCCTCG
NAFlex_ProtDNA_1c7u 1C7U Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CTCGGCTATTAATAGCCGAG
NAFlex_ProtDNA_1cdw 1CDW Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CTGCTATAAAAGGCTG
NAFlex_ProtDNA_1h9t 1H9T Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CATCTGGTACGACCAGATC
NAFlex_ProtDNA_1hlv 1HLV Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 AATCCCGTTTCCAACGAAGGC
NAFlex_ProtDNA_1iv6 1IV6 Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CCCTAACCCTAAC
NAFlex_ProtDNA_1j46 1J46 Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CCTGCACAAACACC
NAFlex_ProtDNA_1j5n 1J5N Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CTGAACAATCACCCC
NAFlex_ProtDNA_1je8 1JE8 Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CGTACCCATTAATGGGTACG
NAFlex_ProtDNA_1k6o 1K6O Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CACAGGATGTCCATATTAGGACA
NAFlex_ProtDNA_1qn5 1QN5 Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 TGCCCTCTTATAGC
NAFlex_ProtDNA_1r4i 1R4I Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CCAGAACATCAAGAACAG
NAFlex_ProtDNA_1vtn 1VTN Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 GACTAAGTCAACC
NAFlex_ProtDNA_1yo5 1YO5 Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 ACACATCCTGCTA
NAFlex_ProtDNA_1zgw 1ZGW Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 GCAAATTAAAGCGCAAGA
NAFlex_ProtDNA_2hdc 2HDC Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 GCTTAAAATAACAATAC
NAFlex_ProtDNA_2kdz 2KDZ Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 AAGATAACGATATTTA
NAFlex_ProtDNA_2l1g 2L1G Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CGCTGCCCACACAAGC
NAFlex_ProtDNA_2lt7 2LT7 Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CGTTATTGGCAGGAAGCAC
NAFlex_ProtDNA_2or1 2OR1 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 AAGTACAAACTTTCTTGTAT
NAFlex_ProtDNA_2stw 2STW Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 TCGAACTTCCGGCTCGA
NAFlex_ProtDNA_3f27 3F27 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CCAGGACAATAGAGAC
NAFlex_ProtDNA_3jxc 3JXC Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CATTTAAGATATCTTAAATG
NAFlex_ProtDNA_3u2b 3U2B Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 GTCTCTATTGTCCTGG
NAFlex_ProtDNA_4f6n 4F6N Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CGTATAGACGCGGTGACAC
NAFlex_ProtDNA_4hqe 4HQE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 AGTATAATTATTATACC
NAFlex_ProtDNA_4oi7 4OI7 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CACGTTCGTAGCATCGTTGCAG
NAFlex_ProtDNA_s1j5n 1J5N Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 GGGGTGATTGTTCAG
NAFlex_ProtDNA_s2lef 2LEF Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CACCCTTTGAAGCTC
NAFlex_ProtDNA_1a0a 1A0A Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 CTAGTCCCACGTGTGAG
NAFlex_2l8f 2L8F Rna A parmBSC0 TIP3P RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral Internal-loops 1,750 GUGAAGCCCGU
NAFlex_BSC1-BSC0 1NAJ Dna B parmBSC0 TIP3P DNA-B Duplex Naked TIP3P Electroneutral ParmBSC0 1,500 CGCGAATTCGCG
NAFlex_BSC1-C36 1NAJ Dna B Charmm36 TIP3P DNA-B Duplex Naked Charmm36 TIP3P Electroneutral 1,500 CGCGAATTCGCGCGCGAATTCGCG
NAFlex_BSC1-Garcia 1NAJ Dna B ParmBSC0-CG TIP3P DNA-B Duplex Naked Cheng-Garcia TIP3P Electroneutral 1,500 CGCGAATTCGCG
NAFlex_BSC1-OL1 1NAJ Dna B ParmBSC0-OL1 TIP3P DNA-B Duplex Naked OL1 TIP3P Electroneutral 1,500 CGCGAATTCGCG
NAFlex_BSC1-OL1-OL4 1NAJ Dna B ParmBSC0-OL1-OL4 TIP3P DNA-B Duplex Naked OL1+OL4 TIP3P Electroneutral 1,500 CGCGAATTCGCG
NAFlex_BSC1-OL4 1NAJ Dna B ParmBSC0-OL4 TIP3P DNA-B Duplex Naked OL4 TIP3P Electroneutral 1,500 CGCGAATTCGCG
NAFlex_DDD_II 1BNA Dna B parmBSC1 TIP3P DNA-B Duplex Naked DDD ParmBSC1 TIP3P Electroneutral 1,200 CGCGAATTCGCG
NAFlex_2oue 2OUE Rna A parmBSC0 TIP3P RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral Flipout-bases Overhanging-bases Hammerhead Ribozyme Bulges 1,065 UCCCXGUCCACCG | CGGUGAGAAGGG | GGCAGAGAAACACACGA
NAFlex_hybrid NONE Rna A parmBSC0 TIP3P Hybrid-A Duplex Naked ParmBSC0 TIP3P Electroneutral 1,037 CTACACGG
NAFlex_2m18 2M18 Rna A parmBSC0 TIP3P RNA-A Quadruplex Naked ParmBSC0 TIP3P Electroneutral G-Quadruplex Tetraplex 1,036 GGGUUAGGGU | GGGUUAGGGU | GGGUUAGGGU | GGGUUAGGGU
NAFlex_2mhi 2MHI Rna A parmBSC0 TIP3P RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral Telomerase 1,027 GGAAACGCCGCGGUCAGCUCGGCUGCUGCGAAGAGUUCGUCUCUGUUGUUUCC
NAFlex_GAGA_RNA 1Q9A Rna A parmBSC0 TIP3P RNA-A Single Stranded Naked ParmBSC0 TIP3P Electroneutral Sarcin-Ricin Hairpin loop Flipout-bases 1,022 CGCGAGAGCG
NAFlex_437d 437D Rna A parmBSC0 TIP3P RNA-A Single Stranded Naked ParmBSC0 TIP3P Electroneutral Pseudoknot Flipout-bases Overhanging-bases Loops 1,015 GGCGCGGCACCGUCCGCGGAACAAACGG
NAFlex_1d11 1D11 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral Ligand-intercalator 1,000 CGTACG
NAFlex_1dcw 1DCW Dna B parmBSC1 TIP3P DNA-B HollidayJunction Naked ParmBSC1 TIP3P Electroneutral 4way-junction inverted-repeat 1,000 CCGGTACCGG | CCGGTACCGG | CCGGTACCGG
NAFlex_1p71 1P71 Prot-Dna B parmBSC1 SPCE DNA-B Duplex Complex ParmBSC1 SPC/E AddedSalt Protein-nuc Flipout-bases 1,000 TGCTTATCAATTTGTTGCA
NAFlex_1p71B 1P71 Prot-Dna B parmBSC1 SPCE DNA-B Duplex Complex ParmBSC1 SPC/E AddedSalt 1,000 TGCAACAAATTGTTGCA
NAFlex_1pqt 1PQT Dna B parmBSC1 TIP3P DNA-B Single Stranded Naked ParmBSC1 TIP3P AddedSalt Hairpin 1,000 GCGAAGC
NAFlex_1tro 1TRO Prot-Dna B parmBSC1 SPCE DNA-B Duplex Complex ParmBSC1 SPC/E AddedSalt Prot-nuc Overhanging-bases 1,000 GTACTAGTTAACTAGTAC
NAFlex_2dgc 2DGC Prot-Dna B parmBSC1 SPCE DNA-B Duplex Complex ParmBSC1 SPC/E AddedSalt Protein-nuc 1,000 GGAGATGACGTCATCTCC
NAFlex_2jwv 2JWV Rna A parmBSC1 TIP3P RNA-A Single Stranded Hairpin-Loop Naked ParmBSC1 TIP3P AddedSalt 1,000 GAUACUUGAAACUGUAAGGUUGGCGUAUC
NAFlex_2lef 2LEF Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 CACCCTTTGAAGCTC
NAFlex_2y95 2Y95 Rna A parmBSC1 TIP3P RNA-A Single-Stranded Naked ParmBSC1 TIP3P AddedSalt Hairpin-loop 1,000 GGCGCAUCGGCGCC
NAFlex_32mer NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 1,000 ATGGATCCATAGACCAGAACATGATGTTCTCA
NAFlex_3jxc 3JXC Prot-Dna B parmBSC1 SPCE DNA-B Duplex Complex ParmBSC1 SPC/E AddedSalt Protein-nuc 1,000 CATTTAAGATATCTTAAATG
NAFlex_AGCG NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCCGAGCGAGCGAGCGGC
NAFlex_AGCT NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCCTAGCTAGCTAGCTGC
NAFlex_CGTG NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCTGCGTGCGTGCGTGGC
NAFlex_GGGA NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCGAGGGAGGGAGGGAGC
NAFlex_GGGC NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCGCGGGCGGGCGGGCGC
NAFlex_GGGG NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCGGGGGGGGGGGGGGGC
NAFlex_GGGT NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCGTGGGTGGGTGGGTGC
NAFlex_HTQ 1KF1 Dna G-loop parmBSC1 TIP3P DNA Single-Stranded G-Loop Naked ParmBSC1 TIP3P Electroneutral Telomer 1,000 AGGGTTAGGGTTAGGGTTAGGG
NAFlex_lks1 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 1,000 GCCTATAAACGCCTATAA
NAFlex_lks2 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 1,000 CTAGGTGGATGACTCATT
NAFlex_lks3 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 1,000 CACGGAACCGGTTCCGTG
NAFlex_lks4 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 1,000 GGCGCGCACCACGCGCGG
NAFlex_oxyQ 1JRN Dna - parmBSC1 TIP3P DNA Quadruplex Naked ParmBSC1 TIP3P AddedSalt Loop Telomer 1,000 GGGGTTTTGGGG
NAFlex_1zgw 1ZGW Dna B parmBSC1 SPCE DNA-B Duplex ParmBSC1 SPC/E AddedSalt 1,000 GCAAATTAAAGCGCAAGA
NAFlex_1yo5 1YO5 Dna B parmBSC1 SPCE DNA-B Duplex ParmBSC1 SPC/E AddedSalt 1,000 ACACATCCTGCTA
NAFlex_1hlv 1HLV Dna B parmBSC1 SPCE DNA-B Duplex Protein-Nuc ParmBSC1 SPC/E AddedSalt 1,000 AATCCCGTTTCCAACGAAGGC
NAFlex_1j5n 1J5N Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 CTGAACAATCACCCC
NAFlex_1iv6 1IV6 Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 CCCTAACCCTAAC
NAFlex_DDD_II_1 1NAJ Dna B parmBSC1 TIP3P DNA-B Duplex Naked DDD ParmBSC1 TIP3P Electroneutral 1,000 CGCGAATTCGCG
NAFlex_DDD_II_2 1NAJ Dna B parmBSC1 TIP3P DNA-B Duplex Naked DDD ParmBSC1 TIP3P Electroneutral 1,000 CGCGAATTCGCG
NAFlex_DSpcCheatham 1BNA Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E Electroneutral 1,000 CGCGAATTCGCG
NAFlex_DSpcDang 1BNA Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E Electroneutral 1,000 CGCGAATTCGCG
NAFlex_DTipCheatham 1BNA Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 1,000 CGCGAATTCGCG
NAFlex_2hdc 1HLV Dna B parmBSC1 SPCE DNA-B Duplex Protein-Nuc ParmBSC1 SPC/E AddedSalt 1,000 GCTTAAAATAACAATAC
NAFlex_muAAAA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCAAAAAAAAAAAAAAGC
NAFlex_muAAAC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCACAAACAAACAAACGC
NAFlex_muAAAT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCATAAATAAATAAATGC
NAFlex_muAGAG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCAGAGAGAGAGAGAGGC
NAFlex_muAGCT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCCTAGCTAGCTAGCTGC
NAFlex_muAGGA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGAAGGAAGGAAGGAGC
NAFlex_muAGGC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGCAGGCAGGCAGGCGC
NAFlex_muAGGT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGTAGGTAGGTAGGTGC
NAFlex_muAGTC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTCAGTCAGTCAGTCGC
NAFlex_muAGTG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTGAGTGAGTGAGTGGC
NAFlex_muATGC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGCATGCATGCATGCGC
NAFlex_muCAAG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCAGCAAGCAAGCAAGGC
NAFlex_muCAAT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCATCAATCAATCAATGC
NAFlex_muCGCG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCCGCGCGCGCGCGCGGC
NAFlex_muCGGA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGACGGACGGACGGAGC
NAFlex_muCGGC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGCCGGCCGGCCGGCGC
NAFlex_muCGGT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGTCGGTCGGTCGGTGC
NAFlex_muCGTA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTACGTACGTACGTAGC
NAFlex_muCGTG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTGCGTGCGTGCGTGGC
NAFlex_muGAAA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCAAGAAAGAAAGAAAGC
NAFlex_muGAAC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCACGAACGAACGAACGC
NAFlex_muGAAT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCATGAATGAATGAATGC
NAFlex_muGATA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTAGATAGATAGATAGC
NAFlex_muGGGA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGAGGGAGGGAGGGAGC
NAFlex_muGGGC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGCGGGCGGGCGGGCGC
NAFlex_muGGGG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGGGGGGGGGGGGGGGC
NAFlex_muGGGT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGTGGGTGGGTGGGTGC
NAFlex_muTAAC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCACTAACTAACTAACGC
NAFlex_muTAAG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCAGTAAGTAAGTAAGGC
NAFlex_muTAAT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCATTAATTAATTAATGC
NAFlex_muTATA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTATATATATATATAGC
NAFlex_muTCGA NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCGATCGATCGATCGAGC
NAFlex_muTGGA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGATGGATGGATGGAGC
NAFlex_muTGGC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGCTGGCTGGCTGGCGC
NAFlex_muTGGT NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGTTGGTTGGTTGGTGC
NAFlex_muTGTA NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTATGTATGTATGTAGC
NAFlex_muTGTC NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTCTGTCTGTCTGTCGC
NAFlex_muTGTG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCTGTGTGTGTGTGTGGC
NAFlex_miniABC_K_1 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCAACGTGCTATGGAAGC
NAFlex_miniABC_K_3 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCAGAAACAGCTCTGCGC
NAFlex_miniABC_K_9 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCGTTAGATTAAAATTGC
NAFlex_miniABC_Na_2 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCAATAAGTACCAGGAGC
NAFlex_miniABC_Na_8 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCGGAGGGCCGGGTGGGC
NAFlex_miniABC_NaK_13 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCTTGTGACGGCTAGGGC
NAFlex_miniABC_NaK_7 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCGACCGAATGTAATTGC
NAFlex_miniABC_K_10 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCTACGCGGATCGAGAGC
NAFlex_miniABC_K_4 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCAGGCGCAAGACTGAGC
NAFlex_miniABC_Na_1 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCAACGTGCTATGGAAGC
NAFlex_miniABC_Na_3 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCAGAAACAGCTCTGCGC
NAFlex_miniABC_Na_9 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCGTTAGATTAAAATTGC
NAFlex_miniABC_NaK_2 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCAATAAGTACCAGGAGC
NAFlex_miniABC_NaK_8 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCGGAGGGCCGGGTGGGC
NAFlex_miniABC_K_11 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCTGATATACGATGCAGC
NAFlex_miniABC_K_5 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCATTGGGGACACTACGC
NAFlex_miniABC_Na_10 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCTACGCGGATCGAGAGC
NAFlex_miniABC_Na_4 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCAGGCGCAAGACTGAGC
NAFlex_miniABC_NaK_1 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCAACGTGCTATGGAAGC
NAFlex_miniABC_NaK_3 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCAGAAACAGCTCTGCGC
NAFlex_miniABC_NaK_9 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCGTTAGATTAAAATTGC
NAFlex_miniABC_K_12 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCTGGCATGAAGCGACGC
NAFlex_miniABC_K_6 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCGAACTCAAAGGTTGGC
NAFlex_miniABC_Na_11 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCTGATATACGATGCAGC
NAFlex_miniABC_Na_5 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCATTGGGGACACTACGC
NAFlex_miniABC_NaK_10 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCTACGCGGATCGAGAGC
NAFlex_miniABC_NaK_4 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCAGGCGCAAGACTGAGC
NAFlex_miniABC_K_13 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCTTGTGACGGCTAGGGC
NAFlex_miniABC_K_7 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCGACCGAATGTAATTGC
NAFlex_miniABC_Na_12 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCTGGCATGAAGCGACGC
NAFlex_miniABC_Na_6 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCGAACTCAAAGGTTGGC
NAFlex_miniABC_NaK_11 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCTGATATACGATGCAGC
NAFlex_miniABC_NaK_5 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCATTGGGGACACTACGC
NAFlex_miniABC_K_2 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCAATAAGTACCAGGAGC
NAFlex_miniABC_K_8 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCGGAGGGCCGGGTGGGC
NAFlex_miniABC_Na_13 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCTTGTGACGGCTAGGGC
NAFlex_miniABC_Na_7 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCGACCGAATGTAATTGC
NAFlex_miniABC_NaK_12 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCTGGCATGAAGCGACGC
NAFlex_miniABC_NaK_6 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCGAACTCAAAGGTTGGC
NAFlex_Z-DNA-4M 1I0T Dna Z parmBSC1 TIP3P DNA-Z Duplex Naked ParmBSC1 TIP3P AddedSalt 946 CGCGCGCGCG
NAFlex_2rn1 2RN1 Rna A parmBSC0 TIP3P RNA-A Naked ParmBSC0 TIP3P Electroneutral TAR Hairpin-loops Aptamer Kissing-loops 906 GAGCCCUGGGAGGCUC
NAFlex_DDD_800ns 1NAJ Dna B parmBSC1 TIP3P DNA-B Duplex Naked DDD ParmBSC1 TIP3P Electroneutral 800 CGCGAATTCGCG
NAFlex_Subi 1GQU Dna DNA hoogsteen parmBSC1 TIP3P DNA-Hoogsteen Duplex Naked ParmBSC1 TIP3P Electroneutral Flipout-bases Overhanging-bases 720 ATATATATATAT
NAFlex_groovebinder 2DND Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral minor-groove-binder 700 CGCAAATTTGCG
NAFlex_nucWT16 1KX5 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 700 ATCAATATCCACCTGCAGATACTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGAATCCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGTATCTGCAGGTGGATATTGAT
NAFlex_H3S57p16 1KX5 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 700 ATCAATATCCACCTGCAGATACTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGAATCCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGTATCTGCAGGTGGATATTGAT | ATCAATATCCACCTGCAGATACTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGATTCCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGTATCTGCAGGTGGATATTGAT
NAFlex_2hkb 2HKB Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 590 CTCGGCGCCATC
NAFlex_2k0v 2K0V Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 590 CCTCTGGTCTCC
NAFlex_2l8q 2L8Q Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 590 CGCATGCTACGC
NAFlex_2lwg 2LWG Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 590 GGATATATCC
NAFlex_2m2c 2M2C Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 590 GCGCATGCTACGCG
NAFlex_2nq1 2NQ1 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 590 CCTCAGGCCTCC
NAFlex_1kx5 1KX5 Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Complex ParmBSC1 TIP3P AddedSalt Protein-nuc Nucleosome 500 ATCAATATCCACCTGCAGATACTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGAATCCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGTATCTGCAGGTGGATATTGAT
NAFlex_56merL NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGCCGGCAGTAGCCGAAAAAATAGGCGCGCGCTCAAAAAAATGCCCCATGCCGCGC
NAFlex_56merTIP3P NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 500 CGCGATTGCCTAACGGACAGGCATAGACGTCTATGCCTGTCCGTTAGGCAATCGCG
NAFlex_AAf NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ModifiedNucleotides ParmBSC1 TIP3P Electroneutral 500 CCATACAATACGG
NAFlex_ACGT NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 500 CGCGACGTCGCG
NAFlex_CTAG_1 NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 500 CGTCGGCTAGCCGAGC
NAFlex_CTAG_10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGCGCGCTAGCGCGGC
NAFlex_CTAG_11 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTACTAGAGAGGC
NAFlex_CTAG_12 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTACTAGCGAGGC
NAFlex_CTAG_13 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTACTAGGGAGGC
NAFlex_CTAG_15 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTCCTAGAGAGGC
NAFlex_CTAG_16 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTCCTAGCGAGGC
NAFlex_CTAG_17 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTCCTAGGGAGGC
NAFlex_CTAG_18 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTGCTAGAGAGGC
NAFlex_CTAG_19 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTGCTAGCGAGGC
NAFlex_CTAG_2 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTCCTAGGAGAGC
NAFlex_CTAG_20 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTTCTAGAGAGGC
NAFlex_CTAG_21 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGACTAGACTCGC
NAFlex_CTAG_22 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGACTAGCCTCGC
NAFlex_CTAG_23 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGACTAGGCTCGC
NAFlex_CTAG_24 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGACTAGTCTCGC
NAFlex_CTAG_25 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGCCTAGACTCGC
NAFlex_CTAG_26 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGCCTAGCCTCGC
NAFlex_CTAG_27 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGCCTAGGCTCGC
NAFlex_CTAG_28 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGGCTAGACTCGC
NAFlex_CTAG_29 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGGCTAGCCTCGC
NAFlex_CTAG_3 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGAAAACTAGAAAAGC
NAFlex_CTAG_30 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGAGTCTAGACTCGC
NAFlex_CTAG_31 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGCTAGCTAGCTAGGC
NAFlex_CTAG_32 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGCTAGCTAGCTAGGC
NAFlex_CTAG_4 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGAAAACTAGTTTTGC
NAFlex_CTAG_5 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGATATCTAGATATGC
NAFlex_CTAG_6 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTATACTAGTATAGC
NAFlex_CTAG_7 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGGGGCTAGGGGGGC
NAFlex_CTAG_8 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGGGGCTAGCCCCGC
NAFlex_CTAG_9 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGCGCCTAGGCGCGC
NAFlex_CTAG_flex NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGCTCTCTAGAGAGGC
NAFlex_CTAG_rig NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGCAAGCTAGCTTGGC
NAFlex_GGf NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ModifiedNucleotides ParmBSC1 TIP3P Electroneutral 500 CCATACGATACGG
NAFlex_TCGA NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 500 CGCGTCGACGCG
NAFlex_TCGAhmet NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 500 CGCGTXGACGCG
NAFlex_TCGAmet NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 500 CGCGTXGACGCG
NAFlex_CTAG_14 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGTCTACTAGTGAGGC
NAFlex_FOX03_rep0 2UZK Dna B parmBSC1 SPCE DNA-B Duplex Protein-Nuc SPC/E AddedSalt 500 GACTATGTAAACAACGC
NAFlex_apsGGC NONE Dna Anti parallel triplex GGC parmBSC1 TIP3P DNA Triplex Naked ParmBSC1 TIP3P Electroneutral 440 GGGGGGGGGG | CCCCCCCCCC | GGGGGGGGGG
NAFlex_psATT NONE Dna parallel triplex ATT parmBSC1 TIP3P DNA Triplex Naked ParmBSC1 TIP3P Electroneutral 440 AAAAAAAAAA | TTTTTTTTTT | TTTTTTTTTT
NAFlex_psGGC NONE Dna parallel triplex GGC parmBSC1 TIP3P DNA Triplex Naked ParmBSC1 TIP3P Electroneutral 440 GGGGGGGGGG | CCCCCCCCCC | GGGGGGGGGG
NAFlex_QAPS 156D Dna anti parallel quadruplex parmBSC1 TIP3P DNA Dimeric Quadruplex Telomeric Naked ParmBSC1 TIP3P Electroneutral 440 GGGG | GGGG | GGGG | GGGG
NAFlex_QPS 352D Dna parallel quadruplex parmBSC1 TIP3P DNA Quadruplex Naked ParmBSC1 TIP3P Electroneutral Parallel 440 GGGG | GGGG | GGGG | GGGG
NAFlex_56merB NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 440 CGCCGGCAGTAGCCGAAAAAATAGGCGCGCGCTCAAAAAAATGCCCCATGCCGCGC
NAFlex_2af1-H-DNA 2AF1 Dna H parmBSC1 TIP3P DNA-B Duplex Naked Hoogsteen ParmBSC1 TIP3P Electroneutral Overhanging-bases 400 CGATATATATAT
NAFlex_PYR NONE Dna DNA unfolding parmBSC1 TIP3P DNA Duplex Naked ParmBSC1 TIP3P Electroneutral 400 GGCGCC
NAFlex_Z-DNA-0M 1I0T Dna Z parmBSC1 TIP3P DNA-Z Duplex Naked ParmBSC1 TIP3P Electroneutral 385 CGCGCGCGCG
NAFlex_56merA NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 360 CGCCGGCAGTAGCCGAAAAAATAGGCGCGCGCTCAAAAAAATGCCCCATGCCGCGC
NAFlex_36merSPCE NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E Electroneutral 300 CGCGATTGCCTAACGAGTACTCGTTAGGCAATCGCG
NAFlex_36merTIP3P NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 300 CGCGATTGCCTAACGAGTACTCGTTAGGCAATCGCG
NAFlex_56merSeq2 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P Electroneutral 300 CGTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGCG
NAFlex_56merSPCE NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E Electroneutral 290 CGCGATTGCCTAACGGACAGGCATAGACGTCTATGCCTGTCCGTTAGGCAATCGCG
NAFlex_ACGThmet NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 250 CGCGAXGTCGCG
NAFlex_ACGTmet NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 250 CGCGAXGTCGCG
NAFlex_rna2 NONE Rna A parmBSC0 TIP3P RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral 250 CUAGGUGGAUGACUCAUU
NAFlex_apsAAT NONE Dna Anti parallel triplex AAT parmBSC1 TIP3P DNA Triplex Naked ParmBSC1 TIP3P Electroneutral 240 AAAAAAAAAA | TTTTTTTTTT | AAAAAAAAAA
NAFlex_ZDNA NONE Dna Z parmBSC1 TIP3P DNA-Z Duplex Naked ParmBSC1 TIP3P Electroneutral 240 CGCGCGCGCG
NAFlex_rna3 NONE Rna A parmBSC0 TIP3P RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral 202 CACGGAACCGGUUCCGUC
NAFlex_rna4 NONE Rna A parmBSC0 TIP3P RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral 201 GGCGCGCACCACGCGCGG
NAFlex_1fzx 1FZX Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral A-track 200 GGCAAAAAACGG
NAFlex_1sk5 1SK5 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral A-track 200 CTTTTAAAAG
NAFlex_1vt5 1VT5 Dna A parmBSC1 TIP3P DNA-A Duplex Naked ParmBSC1 TIP3P Electroneutral 200 CCCCGGGG
NAFlex_440d 440D Dna A parmBSC1 TIP3P DNA-A Duplex Naked ParmBSC1 TIP3P Electroneutral 200 AGGGGCCCCT
NAFlex_rna1 NONE Rna A parmBSC0 TIP3P RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral 200 GCCUAUAAACGCCUAUAA
NAFlex_1rvh 1RVH Dna B parmBSC1 TIP3P DNA-B ParmBSC1 PhysiologicalTemp TIP3P Electroneutral Dang Duplex 200 GCAAAATTTTGC
NAFlex_A-Ethanol 1BNA Dna A (in ethanol) parmBSC1 Wat-Ethanol DNA-A Duplex Naked ParmBSC1 Water-Ethanol Electroneutral 200 CGCGAATTCGCG
NAFlex_1d89 1D89 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 200 CGCGAAAAAACG
NAFlex_v100t9 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 ATCTTGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGTTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106Bt10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 TGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGATATCTT
NAFlex_v106Ct10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 GAGGATATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGT
NAFlex_v106R2t10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106R3t10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106t10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_DDD_GMX_CPU 1NAJ Dna B parmBSC1 TIP3P DNA-B Duplex Naked DDD ParmBSC1 TIP3P Electroneutral 100 CGCGAATTCGCG
NAFlex_DDD_GMX_GPU 1NAJ Dna B parmBSC1 TIP3P DNA-B Duplex Naked DDD ParmBSC1 TIP3P Electroneutral 100 CGCGAATTCGCG
NAFlex_DDD_Amber_CPU 1NAJ Dna B parmBSC1 TIP3P DNA-B Duplex Naked DDD ParmBSC1 TIP3P Electroneutral 100 CGCGAATTCGCG
NAFlex_DDD_Amber_GPU 1NAJ Dna B parmBSC1 TIP3P DNA-B Duplex Naked DDD ParmBSC1 TIP3P Electroneutral 100 CGCGAATTCGCG
NAFlex_v106t9 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 50 ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_A2B_1 1BNA Dna B parmBSC1 TIP3P DNA-Mixed Duplex Naked ParmBSC1 TIP3P Electroneutral Transition 40 CGCGAATTCGCG
NAFlex_A2B_2 1BNA Dna B parmBSC1 TIP3P DNA-Mixed Duplex Naked ParmBSC1 TIP3P Electroneutral Transition 40 CGCGAATTCGCG
NAFlex_A2B_3 1BNA Dna B parmBSC1 TIP3P DNA-Mixed Duplex Naked ParmBSC1 TIP3P Electroneutral Transition 40 CGCGAATTCGCG
NAFlex_A2B_4 1BNA Dna B parmBSC1 TIP3P DNA-Mixed Duplex Naked ParmBSC1 TIP3P Electroneutral Transition 40 CGCGAATTCGCG
NAFlex_A2B_5 1BNA Dna B parmBSC1 TIP3P DNA-Mixed Duplex Naked ParmBSC1 TIP3P Electroneutral Transition 40 CGCGAATTCGCG
NAFlex_MuG_TRF1 1W0T Dna B parmBSC0 SPCE DNA-B Duplex Complex ParmBSC0 SPC/E 40 TGTTAGGGTTAGGGTTAG