Nucleosome Dynamics Help - Input data

Input data

Input data Help

  • MNase-seq data is the primary input for Nucleosome Dynamics portal. User needs to upload it to the server in BAM format, a binary format containing the reads already aligned against the reference genome.
  • Genome Alignment can be performed using Bowtie, BWA or GEM3. MuG VRE implementation contains tools to perform alignment before running Nucleosome Dynamics.
  • We recommend at least a 20x genome coverage to get significant results.
  • Click here to view the reference genomes currently implemented in the server.

    Homo Sapiens Hg19 / GRCh37
    Hg38 / GRCh38
    Mus Musculus GRCm38 / mm10
    NCBI37 / mm9
    Xenopus tropicalis V9.1 / xenTro9
    Zebrafish GRCz11 / danRer11
    Drosophila Melanogaster BDGP r6 + ISO1 MT / dm6
    R5.01 / dm3
    Saccharomyces cerevisiae R64-1-1 / sacCer3
    Schizosaccharomyces pombe ASM294v2