Molecular Modeling and Bioinformatics Group

Nucleosome Dynamics

MoDEL: Molecular Dynamics Extended Library

FlexServ: Protein Flexibility Server

NAFlex: Nucleic Acid Flexibility

MDdMD: Maxwell-Demon discrete Molecular Dynamics

DNAlive: physical analysis of DNA at the genomic scale

PMut: Pathological Mutations

pyPcazip: PCA-based trajectory file compression and analysis

DASiR: Distributed Annotation System in R

GOdMD: Conformational Transitions with discrete Molecular Dynamics

BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data

PCAsuite: Tool for trajectory compression

nucleR: non-parametric nucleosome positioning

Curves+ Web Server

Protein Data Bank Local Repository

Previous Pause Next

Last most-relevant publications

Probing allosteric regulations with coevolution-driven molecular simulations Science advances
Impact of DNA methylation on 3D genome structure Nature Communications
4D Genome Rewiring during Oncogene-Induced and Replicative Senescence Molecular Cell
Emergence of chromatin hierarchical loops from protein disorder and nucleosome asymmetry Proceedings of the National Academy of Sciences

MMB's new website

Molecular Modeling and Bioinformatics group is proud to present its new website.

We hope this new space can be useful to our members and the scientific community.

Pages

Youtube channel

Check our Youtube channel

MuG VRE

MuG VRE is now open!

Virtual Research Environment for 3D/4D genomics data

ParmBSC1 force-field

ParmBSC1 forcefield download

Join the MuG Community:

Nostrum Biodiscovery

Launch of Nostrum BioDiscovery, a spin-off that applies supercomputing to speed up drug discovery

MMB Group

The Molecular Modeling and Bioinformatics (MMB) research group is part of the Joint BSC-CRG-IRB program in Computational Biology. Our group is composed by members of the Institute for Research in Biomedicine (IRB-Barcelona) and the Barcelona Supercomputing Center (BSC) with the long-term objective to understand the behavior of living organisms from the basic rules of physics. In other words, our mission is to represent life by means of theoretical calculations. [more]

MMB GROUP FORUM

Click below to enter the MMB Forum. You must init session with your IRB e-mail.