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GOdMD: Conformational Transitions with discrete Molecular Dynamics

Curves+ Web Server

MoDEL: Molecular Dynamics Extended Library

Nucleosome Dynamics

MDWeb & MDMoby

BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data

NAFlex: Nucleic Acid Flexibility

DASiR: Distributed Annotation System in R

Protein Data Bank Local Repository

MDdMD: Maxwell-Demon discrete Molecular Dynamics

pyPcazip: PCA-based trajectory file compression and analysis

nucleR: non-parametric nucleosome positioning

PMut: Pathological Mutations

DNAlive: physical analysis of DNA at the genomic scale

FlexServ: Protein Flexibility Server

PCAsuite: Tool for trajectory compression

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Last most-relevant publications

  • DNA double-strand break-derived RNA drives TIRR/53BP1 complex dissociation Cell Reports
  • MiOS, an integrated imaging and computational strategy to model gene folding with nucleosome resolution Nat Struct Mol Biol
  • DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors Nucleic Acids Res
  • BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations Nucleic Acids Res

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MuG VRE

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Virtual Research Environment for 3D/4D genomics data

ParmBSC1 force-field

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Nostrum Biodiscovery

 

Launch of Nostrum BioDiscovery, a spin-off that applies supercomputing to speed up drug discovery

MMB Group

The Molecular Modeling and Bioinformatics (MMB) research group is part of the Joint BSC-CRG-IRB program in Computational Biology. Our group is composed by members of the Institute for Research in Biomedicine (IRB-Barcelona) and the Barcelona Supercomputing Center (BSC) with the long-term objective to understand the behavior of living organisms from the basic rules of physics. In other words, our mission is to represent life by means of theoretical calculations. [more]

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