Molecular Modeling and Bioinformatics Group

Nucleosome Dynamics

MDdMD: Maxwell-Demon discrete Molecular Dynamics

pyPcazip: PCA-based trajectory file compression and analysis

PCAsuite: Tool for trajectory compression

Curves+ Web Server

DASiR: Distributed Annotation System in R

FlexServ: Protein Flexibility Server

PMut: Pathological Mutations

NAFlex: Nucleic Acid Flexibility

BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data

Protein Data Bank Local Repository

MoDEL: Molecular Dynamics Extended Library

DNAlive: physical analysis of DNA at the genomic scale

nucleR: non-parametric nucleosome positioning

GOdMD: Conformational Transitions with discrete Molecular Dynamics

Previous Pause Next

Last most-relevant publications

Mechanism of reaction of RNA-dependent RNA polymerase from SARS-CoV-2 Chem Catalysis
Probing allosteric regulations with coevolution-driven molecular simulations Science advances
Impact of DNA methylation on 3D genome structure Nature Communications
4D Genome Rewiring during Oncogene-Induced and Replicative Senescence Molecular Cell

MMB's new website

Molecular Modeling and Bioinformatics group is proud to present its new website.

We hope this new space can be useful to our members and the scientific community.

Pages

Stop Ukraine War

Youtube channel

Check our Youtube channel

MuG VRE

MuG VRE is now open!

Virtual Research Environment for 3D/4D genomics data

ParmBSC1 force-field

ParmBSC1 forcefield download

Join the MuG Community:

Nostrum Biodiscovery

Launch of Nostrum BioDiscovery, a spin-off that applies supercomputing to speed up drug discovery

MMB Group

The Molecular Modeling and Bioinformatics (MMB) research group is part of the Joint BSC-CRG-IRB program in Computational Biology. Our group is composed by members of the Institute for Research in Biomedicine (IRB-Barcelona) and the Barcelona Supercomputing Center (BSC) with the long-term objective to understand the behavior of living organisms from the basic rules of physics. In other words, our mission is to represent life by means of theoretical calculations. [more]

MMB GROUP FORUM

Click below to enter the MMB Forum. You must init session with your IRB e-mail.