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ask.bioexcel.eu is a forum to support the community for computational biomolecular research in academia and industry, with particular focus on biomolecular simulation and modelling and using high-performance computing (HPC) and high-throughput computing (HTC).
Below you can find the list of all the packages and a link to their corresponding contact section in GitHub:
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biobb_amber
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biobb_analysis
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biobb_chemistry
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biobb_cmip
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biobb_common
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biobb_cp2k
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biobb_dna
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biobb_flexdyn
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biobb_flexserv
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biobb_godmd
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biobb_gromacs
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biobb_haddock
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biobb_io
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biobb_md
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biobb_mem
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biobb_ml
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biobb_model
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biobb_pdb_tools
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biobb_pmx
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biobb_pytorch
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biobb_structure_utils
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biobb_vs
Below you can find the list of all the workflows and a link to their corresponding contact section in GitHub:
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GROMACS Protein MD Setup
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Automatic Ligand parameterization
Open new issue for Automatic Ligand parameterization workflow
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GROMACS Protein-Ligand Complex MD Setup
Open new issue for GROMACS Protein-Ligand Complex MD Setup workflow
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Mutation Free Energy Calculations
Open new issue for Mutation Free Energy Calculations workflow
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Protein-ligand Docking (Cluster90)
Open new issue for Protein-ligand Docking (Cluster90) workflow
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Protein-ligand Docking (PDBe REST-API)
Open new issue for Protein-ligand Docking (PDBe REST-API) workflow
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Protein-ligand Docking (fpocket)
Open new issue for Protein-ligand Docking (fpocket) workflow
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Molecular Interaction Potentials
Open new issue for Molecular Interaction Potentials workflow
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Protein conformational ensembles generation
Open new issue for Protein conformational ensembles generation workflow
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Macromolecular Coarse-Grained Flexibility
Open new issue for Macromolecular Coarse-Grained Flexibility workflow
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Protein conformational transitions calculations
Open new issue for Protein conformational transitions calculations workflow
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AMBER Protein MD Setup
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AMBER Protein-ligand complex MD Setup
Open new issue for AMBER Protein-ligand complex MD Setup workflow
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AMBER Constant pH MD setup
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ABC MD Setup
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Structural DNA helical parameters
Open new issue for Structural DNA helical parameters workflow
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Molecular Structure Checking
Click the button below and open a new BioBB REST API issue:
Click the button below and open a new BioBB Workflows website issue:
Only in case your request is not related to some of the previous subjects, click the button below to open a generic issue: