Biblio

Found 55 results
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Deciphering the mechanical code of the genome and epigenome, Basu, Aakash, Bobrovnikov Dmitriy G., Cieza Basilio, Arcon Juan Pablo, Qureshi Zan, Orozco Modesto, and Ha Taekjip , Nat Struct Mol Biol, 12/2022, Volume 29, Issue 12, p.1178 - 1187, (2022)
Determination of a Structural Ensemble Representing the Dynamics of a G-Quadruplex DNA, Portella, Guillem, Orozco Modesto, and Vendruscolo Michele , Biochemistry, 12/2019, (2019)
Developments and applications of the OPTIMADE API for materials discovery, design, and data exchange, Evans, Matthew, Bergsma Johan, Merkys Andrius, Andersen Casper, Andersson Oskar B., Beltrán Daniel, Blokhin Evgeny, Boland Tara M., Balderas Rubén Castañeda, Choudhary Kamal, et al. , Digital Discovery, 04/2024, p. - , (2024)
DFFR: A New Method for High-Throughput Recalibration of Automatic Force-Fields for Drugs, Moreno, David, Zivanovic Sanja, Colizzi Francesco, Hospital Adam, Aranda Juan, Soliva Robert, and Orozco Modesto , Journal of Chemical Theory and Computation, 08/2020, (2020)
DNA double-strand break-derived RNA drives TIRR/53BP1 complex dissociation, Ketley, Ruth F., Battistini Federica, Alagia Adele, Mondielli Clémence, Iehl Florence, Balikçi Esra, Huber Kilian V. M., Orozco Modesto, and Gullerova Monika , Cell Reports, 10/2022, Volume 41, Issue 4, (2022)
DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region, Cuppari, Anna, Fernández-Millán Pablo, Battistini Federica, Tarrés-Solé Aleix, Lyonnais Sébastien, Iruela Guillermo, Ruiz-López Elena, Enciso Yuliana, Rubio-Cosials Anna, Prohens Rafel, et al. , Nucleic acids research, 09/2019, Volume 47, Issue 12, p.6519 - 6537, (2019)
DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors, Barissi, Sandro, Sala Alba, Wieczór Miłosz, Battistini Federica, and Orozco Modesto , Nucleic Acids Res, 09/2022, Volume 50, Issue 16, (2022)
M
Main role of fractal-like nature of conformational space in subdiffusion in proteins, Maggi, Luca, and Orozco Modesto , Physical Review E, 03/2024, Volume 109, Issue 3, p.034402, (2024)
MD-DATA: the legacy of the ABC Consortium, Hospital, Adam, and Orozco Modesto , Biophysical Reviews, 04/2024, (2024)
Mechanism of reaction of RNA-dependent RNA polymerase from SARS-CoV-2, Aranda, Juan, Wieczór Milosz, Terrazas Montserrat, Brun-Heath Isabelle, and Orozco Modesto , Chem Catalysis, 05/2022, Volume 2, Issue 5, p.1099, (2022)
MiOS, an integrated imaging and computational strategy to model gene folding with nucleosome resolution, Neguembor, Maria Victoria, Arcon Juan Pablo, Buitrago Diana, Lema Rafael, Walther Jurgen, Garate Ximena, Martin Laura, Romero Pablo, Abed Jumana AlHaj, Gut Marta, et al. , Nat Struct Mol Biol , 10/2022, Volume in press, (2022)
Modeling, Simulations, and Bioinformatics at the Service of RNA Structure, Dans, Pablo D., Gallego Diego, Balaceanu Alexandra, Darré Leonardo, Gómez Hansel, and Orozco Modesto , Chem, 10/2019, Volume 5, Issue 1, p.51 - 73, (2019)
Molecular basis of Arginine and Lysine DNA sequence-dependent thermo-stability modulation, Martin, Benjamin, Dans Pablo D., Wieczór Milosz, Villegas Núria, Brun-Heath Isabelle, Battistini Federica, Terrazas Montserrat, and Orozco Modesto , PLoS computational biology, 01/2022, Volume 18, Issue 1, p.e1009749 - e1009749, (2022)
Molecular dynamics modelling of the interaction of a synthetic zinc-finger miniprotein with DNA, Rodriguez, Jessica, Battistini Federica, Learte-Aymamí Soraya, Orozco Modesto, and Mascareñas José L. , RSC Chemical Biology, 05/2023, p. - , (2023)
Molecular stripping underpins derepression of a toxin–antitoxin system, Grabe, Grzegorz J., Giorgio Rachel T., Wieczór Miłosz, Gollan Bridget, Sargen Molly, Orozco Modesto, Hare Stephen A., and Helaine Sophie , Nat Struct Mol Biol, 2024/03/27, (2024)
Molywood: streamlining the design and rendering of molecular movies, Wieczór, Miłosz, Hospital Adam, Bayarri Genis, Czub Jacek, and Orozco Modesto , Bioinformatics, 06/2020, (2020)
A multi-modal coarse grained model of DNA flexibility mappable to the atomistic level, Walther, Jurgen, Dans Pablo D., Balaceanu Alexandra, Hospital Adam, Bayarri Genis, and Orozco Modesto , Nucleic Acids Research, 01/2020, (2020)
Mutation in KARS: A novel mechanism for severe anaphylaxis, Ribó, Pau, Guo Yanru, Aranda Juan, Ainsua-Enrich Erola, Navinés-Ferrer Arnau, Guerrero Mario, Pascal Mariona, de la Cruz Cinthia, Orozco Modesto, Muñoz-Cano Rosa, et al. , Journal of Allergy and Clinical Immunology, 05/2021, Volume 147, Issue 5, p.1855 - 1864.e9, (2021)

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