MC DNA Help - Outputs


Outputs Help


In the ‘Summary’ section, you can download all the analysis results and the structure / trajectory in a compressed tar.gz file. Also, you can view the structure with DNA in relaxed state and / or the trajectory. Both of them are visualized in NGL viewer.

The “Download all summary in a compressed file” provides the user with the equilibrium structure (as pdb) and the trajectory (in AMBER format mdcrd).

Inputs Summary

List of input parameters used to do the simulation.


Relaxed structure from “Create Structure” visualized by NGL viewer.


Trajectory from “Create Trajectory” visualized by NGL viewer.

Structure Flexibility Analysis

See “Analysis” in the Help Menu.

Trajectory Flexibility Analysis

See “Analysis” in the Help Menu.