Create new project

Create project from structure

In this category users can custom, configure and execute the following workflows related with MD setup of structures. Take into account that the availability of each project depends on the structure checking parameters and the inputs provided:

1
Provide
structure
2
Check
structure
3
 
Settings
4
Run
project

Please, select a single PDB file from your computer. Input structure file should follow PDB File Format v.3.30 (July 13, 2011), click here for more info.

Note that, in order to avoid future problems in the workflow, all the hydrogens present in the structure will be removed. Heteroatoms present in structure, must be tagged as HETATM instead of ATOM in order for the server to properly recognize them.

 
Select file Change Remove

Upload a structure from its corresponding PDB ID.

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Upload an AlphaFold structure from its corresponding Uniprot ID.

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Perform a search on the Protein Data Bank.